OTS/OTSCPP/OpenDll/OxfordApi61Dll/Extender Code Samples/ExampleCode.WPF/MapAcquisition.xaml.cs

namespace OINA.Extender.WPF.Testharness
{
    using System;
    using System.Collections.Generic;
    using System.Collections.ObjectModel;
    using System.ComponentModel;
    using System.Linq;
    using System.Windows;
    using System.Windows.Controls;
    using System.Windows.Threading;
    using OINA.Extender.Acquisition;
    using OINA.Extender.Acquisition.Ed;
    using OINA.Extender.Data.Ed;
    using OINA.Extender.Data.Image;
    using OINA.Extender.Processing;
    using OINA.Extender.Processing.Ed;

    /// <summary>
    /// Interaction logic for MapAcquisition.xaml
    /// </summary>
    public partial class MapAcquisition : UserControl, INotifyPropertyChanged
    {
        private readonly List<DetectorEnableModel> enabledDetectors;
        private EdHardwareId primaryHardwareId;
        private List<DetectorEnableModel> secondaryHardwareIds;
        private IEdMapAcquisitionController controller;
        private IEdSpectrum spectrum;
        private ObservableCollection<IEdMap> acquiredMaps;
        private IEdMap selectedMap;
        private IReadOnlyList<IEdMapImage> elementMaps;
        private double progressPercentage;
        private IEdMapAcquisitionData mapData;
        private IEdMapProcessor mapProcessor;
        private IAutoIdSettings autoIdSettings;
        private IEdSpectrumProcessing spectrumProcessing;

        public MapAcquisition()
        {
            this.InitializeComponent();
            this.DataContext = this;

            this.autoIdSettings = ProcessingFactory.CreateAutoIdSettings();
            this.spectrumProcessing = ProcessingFactory.CreateSpectrumProcessing();

            this.Settings = AcquireFactory.CreateEdMapSettings();

            // pixel size is the number of data pixels in x
            double pixelSize = 1.0 / 128;
            this.Settings.ScanSettings.AcquisitionRegion.CreateFullFieldRegion(pixelSize);
            this.Settings.ScanSettings.FrameCount = 1;

            this.enabledDetectors = this.Settings.EdSettings.IsHardwareEnabled
                .Select(i => new DetectorEnableModel(i.Key, i.Value)).ToList();

            this.PrimaryHardwareId = this.Settings.EdSettings.PrimaryHardwareId;

            this.controller = AcquireFactory.CreateEdMapServer();
            this.controller.ExperimentStarted += this.OnExperimentStarted;
            this.controller.ExperimentFinished += this.OnExperimentFinished;

            this.acquiredMaps = new ObservableCollection<IEdMap>();
        }

        /// <summary>
        /// Event that notifies that the processing progress has changed
        /// </summary>
        public event PropertyChangedEventHandler PropertyChanged;

        private void RaisePropertyChanged(string propertyName)
        {
            this.PropertyChanged?.Invoke(this, new PropertyChangedEventArgs(propertyName));
        }

        private void StartButton_Click(object sender, System.Windows.RoutedEventArgs e)
        {
            this.ElementMaps = null;
            this.ProgressPercentage = 0;

            var edSettings = this.Settings.EdSettings;
            var scanSettings = this.Settings.ScanSettings;

            foreach (var detectorEnabled in this.secondaryHardwareIds)
            {
                edSettings.EnableDevice(detectorEnabled.EdHardwareId, detectorEnabled.IsDetectorEnabled);
            }

            edSettings.PrimaryHardwareId = this.primaryHardwareId;
            edSettings.AcquisitionMode = EdAcquireMode.LiveTime;

            // 1ms pixel dwell time
            edSettings.AcquisitionTime = TimeSpan.FromMilliseconds(1);
            edSettings.TimeMode = EdTimeMode.Pixel;

            var results = this.Settings.Validate();
            if (!results.IsValid)
            {
                string errors = string.Join(Environment.NewLine, results.ValidationErrors);
                MessageBox.Show(errors, @"Invalid acquisition settings");
                return;
            }

            this.controller.StartAcquisition(this.Settings);
        }

        private void StopButton_Click(object sender, System.Windows.RoutedEventArgs e)
        {
            this.controller.StopAcquisition();
        }

        private void OnExperimentStarted(object sender, AcquisitionStartedEventArgs<IEdMapAcquisitionData> e)
        {
            this.Spectrum = e.Value.EdSpectrum;
            this.mapData = e.Value;
        }

        private void OnExperimentFinished(object sender, AcquisitionFinishedEventArgs<IEdMapAcquisitionData> e)
        {
            var edMap = e.Value?.EdMap;
            if (edMap != null)
            {
                this.Dispatcher.BeginInvoke(() =>
                {
                    this.acquiredMaps.Add(edMap);
                    this.SelectedMap = edMap;
                });
            }
        }

        public IEdSpectrum Spectrum
        {
            get
            {
                return this.spectrum;
            }

            set
            {
                this.spectrum = value;
                this.RaisePropertyChanged(nameof(this.Spectrum));
            }
        }

        public IEdMapSettings Settings { get; }

        public EdHardwareId PrimaryHardwareId
        {
            get
            {
                return this.primaryHardwareId;
            }

            set
            {
                if (this.primaryHardwareId == value)
                {
                    return;
                }

                this.primaryHardwareId = value;
                this.RaisePropertyChanged(nameof(this.PrimaryHardwareId));

                this.SecondaryHardwareIds = this.enabledDetectors.Where(i => i.EdHardwareId != value).ToList();
            }
        }

        public IReadOnlyList<DetectorEnableModel> SecondaryHardwareIds
        {
            get
            {
                return this.secondaryHardwareIds;
            }

            set
            {
                this.secondaryHardwareIds = value.ToList();
                this.RaisePropertyChanged(nameof(this.SecondaryHardwareIds));
            }
        }

        /// <summary>
        /// Gets the acquired maps
        /// </summary>
        public ObservableCollection<IEdMap> AcquiredMaps
        {
            get
            {
                return this.acquiredMaps;
            }
        }

        /// <summary>
        /// Gets or sets the selected map
        /// </summary>
        public IEdMap SelectedMap
        {
            get
            {
                return this.selectedMap;
            }

            set
            {
                this.selectedMap = value;
                this.RaisePropertyChanged(nameof(this.SelectedMap));
            }
        }

        /// <summary>
        /// Deletes the selected map
        /// </summary>
        private void DeleteMapButton_Click(object sender, RoutedEventArgs e)
        {
            // Maps should be deleted when they are no longer required as the data is saved in the
            // AppData\Local\Oxford Instruments NanoAnalysis\Extender\TempProject folder of the current user
            // Note these projects cannot be used with AZtec.
            var edMap = this.selectedMap;
            if (edMap != null)
            {
                this.controller.Delete(edMap);
                edMap.Dispose();

                this.acquiredMaps.Remove(edMap);
                this.SelectedMap = this.acquiredMaps.LastOrDefault();
            }
        }

        #region FLS Processing

        /// <summary>
        /// Starts FLS map processing
        /// </summary>
        /// <param name="mapData">The map data</param>
        private void StartFLSProcessing(IEdMapAcquisitionData mapData)
        {
            this.PerformAutoId(mapData);
            var processor = ProcessingFactory.CreateEdMapFLSProcessor();
            var settings = ProcessingFactory.CreateEdMapFLSSettings();

            try
            {
                this.MapProcessor = processor;
                this.ElementMaps = processor.StartProcessing(mapData, settings);
            }
            catch (Exception ex)
            {
                MessageBox.Show(ex.Message, @"Error starting FLS processing");
            }
        }

        #endregion

        #region window integral processing

        /// <summary>
        /// Starts window integral map processing
        /// </summary>
        /// <param name="mapData">The map data</param>
        private void StartWindowIntegralProcessing(IEdMapAcquisitionData mapData)
        {
            this.PerformAutoId(mapData);
            var processor = ProcessingFactory.CreateEdMapWindowIntegralProcessor();
            var settings = ProcessingFactory.CreateEdMapWindowIntegralSettings();

            try
            {
                this.MapProcessor = processor;
                this.ElementMaps = processor.StartProcessing(mapData, settings);
            }
            catch (Exception ex)
            {
                MessageBox.Show(ex.Message, @"Error starting window integral processing");
            }
        }

        #endregion

        #region common map processing

        /// <summary>
        /// Gets or sets the Ed Map processor
        /// </summary>
        private IEdMapProcessor MapProcessor
        {
            get
            {
                return this.mapProcessor;
            }

            set
            {
                if (this.mapProcessor == value)
                {
                    return;
                }

                var processor = this.mapProcessor;
                if (processor != null)
                {
                    processor.CancelProcessing();
                    processor.ProgressChanged -= this.OnProcessingProgressChanged;
                    processor.Dispose();
                }

                this.mapProcessor = value;
                if (value != null)
                {
                    value.ProgressChanged += this.OnProcessingProgressChanged;
                }
            }
        }

        private void OnProcessingProgressChanged(object sender, ProcessingProgressEventArgs e)
        {
            this.ProgressPercentage = e.ProgressPercentage;
            if (e.State == ProcessingProgressState.Completed)
            {
                this.elementMaps.ToList().ForEach(i => i.AutoBrightness());

                // calculate total counts in the first element map
                var elementMap = this.elementMaps.OfType<IEdMapImage>().FirstOrDefault();
                if (elementMap != null)
                {
                    int pixels = elementMap.Height * elementMap.Width;
                    float[] countsPerSecond = new float[pixels];
                    elementMap.GetData(countsPerSecond);

                    float[] liveTimes = new float[pixels];
                    this.mapData.EdMap.GetLiveTimes(elementMap.BinFactor, liveTimes);

                    double totalCounts = Enumerable.Range(0, pixels).Sum(i => countsPerSecond[i] * liveTimes[i]);
                }
            }
        }

        /// <summary>
        /// Gets or sets the processing percentage (0 - 100)
        /// </summary>
        public double ProgressPercentage
        {
            get
            {
                return this.progressPercentage;
            }

            set
            {
                this.progressPercentage = value;
                this.RaisePropertyChanged(nameof(this.ProgressPercentage));
            }
        }

        /// <summary>
        /// Gets or sets the element maps
        /// </summary>
        public IReadOnlyList<IEdMapImage> ElementMaps
        {
            get
            {
                return this.elementMaps;
            }

            set
            {
                if (this.elementMaps == value)
                {
                    return;
                }

                var elementMaps = this.elementMaps;
                elementMaps?.ToList().ForEach(i => i.Dispose());

                this.elementMaps = value;
                this.RaisePropertyChanged(nameof(this.ElementMaps));
            }
        }

        private void PerformAutoId(IEdMapAcquisitionData mapData)
        {
            try
            {
                // Identify the elements in the sum spectrum
                var elements = this.spectrumProcessing.IdentifyElements(mapData.EdSpectrum, this.autoIdSettings);

                if (elements.Any())
                {
                    // Update the identified elements in the map. Used to create the element maps.
                    mapData.EdMap.ClearIdentifiedElements();
                    mapData.EdMap.SetIdentifiedElements(elements, true);

                    // Update the peak labels
                    this.spectrumProcessing.UpdatePeakLabels(mapData.EdSpectrum, null);
                }
            }
            catch (Exception ex)
            {
                MessageBox.Show(ex.Message, @"Error processing spectrum");
            }
        }

        private void CancelButton_Click(object sender, RoutedEventArgs e)
        {
            this.MapProcessor?.CancelProcessing();
        }

        #endregion

        private void WindowIntegral_Click(object sender, RoutedEventArgs e)
        {
            if (this.mapData != null)
            {
                this.StartWindowIntegralProcessing(this.mapData);
            }
        }

        private void FLS_Click(object sender, RoutedEventArgs e)
        {
            if (this.mapData != null)
            {
                this.StartFLSProcessing(this.mapData);
            }
        }
    }
}